PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf18643g00018.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 490aa MW: 54027.8 Da PI: 6.0351

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf18643g00018.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.5e-36	143	202	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+st+tkfCyynn +++qPr+fC++C+ryWt GG++rn+PvG+grrknk+ Niben101Scf18643g00018.1 143 PDKILPCPRCNSTDTKFCYYNNNNVNQPRHFCRSCQRYWTSGGTMRNLPVGAGRRKNKNL 202 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	134	200	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.6E-31	145	201	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.848	147	201	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	149	185	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MTCNSEIKLF GKILPMVVSG EYSGANRSTI DNQSSTGFDV DQYLEDNRTS SSEKDEVSES 60 IDFKNQAADK DNMHITRELS EDKLEEEGQN QTVEESENPK TSSESETSPK FPSDEDHQTV 120 KSSENENEPN NATDSQQTPL KKPDKILPCP RCNSTDTKFC YYNNNNVNQP RHFCRSCQRY 180 WTSGGTMRNL PVGAGRRKNK NLASHYGHIS IPDDVLLAAK IESPNGFHYP MFKPNGTVLS 240 FGPELPLCDS MASALNPAEK RAPNVIPNGF YKQEHTNSSC KGGENGDDCS KGSSIKNSSM 300 MVEGGNIKPH EAVMLNTNGF PSPAPCLHGV PFPFPWNAAV PMSAIYPFGF PMPFHPAHYW 360 NCSVPPWSNP WLSQPSRTEN EKASGSDPNS PLGKHSREGD DPEGNEPVER KSSKRSILVP 420 KTLRIDDPGE AAKSSIWSTL GIKYDSASRG GFFKALQPKI DDKDHKDSTS PVLHANPAAL 480 SRSLVLQERT

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MTCNSEIKLF GKILPMVVSG EYSGANRSTI DNQSSTGFDV DQYLEDNRTS SSEKDEVSES  60
IDFKNQAADK DNMHITRELS EDKLEEEGQN QTVEESENPK TSSESETSPK FPSDEDHQTV  120
KSSENENEPN NATDSQQTPL KKPDKILPCP RCNSTDTKFC YYNNNNVNQP RHFCRSCQRY  180
WTSGGTMRNL PVGAGRRKNK NLASHYGHIS IPDDVLLAAK IESPNGFHYP MFKPNGTVLS  240
FGPELPLCDS MASALNPAEK RAPNVIPNGF YKQEHTNSSC KGGENGDDCS KGSSIKNSSM  300
MVEGGNIKPH EAVMLNTNGF PSPAPCLHGV PFPFPWNAAV PMSAIYPFGF PMPFHPAHYW  360
NCSVPPWSNP WLSQPSRTEN EKASGSDPNS PLGKHSREGD DPEGNEPVER KSSKRSILVP  420
KTLRIDDPGE AAKSSIWSTL GIKYDSASRG GFFKALQPKI DDKDHKDSTS PVLHANPAAL  480
SRSLVLQERT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587069.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A314KUW5	0.0	A0A314KUW5_NICAT; Cyclic dof factor 3
STRING	XP_009587069.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-80	cycling DOF factor 3