PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf19091g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 149aa    MW: 16845.7 Da    PI: 5.9986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf19091g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-182265148
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                              ++y+GVr+++ +gr++AeIr p++   ++r++lg+f+taeeAa a++ 
  Niben101Scf19091g00016.1 22 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTFDTAEEAALAYDI 65
                              69********.**********933...5******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.86E-282280No hitNo description
PfamPF008475.5E-122264IPR001471AP2/ERF domain
PROSITE profilePS5103220.5742381IPR001471AP2/ERF domain
SMARTSM003806.6E-292387IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-182381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-272380IPR001471AP2/ERF domain
PRINTSPR003672.2E-92435IPR001471AP2/ERF domain
PRINTSPR003672.2E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MENIIPQLHV RNLGRRSSRH STKYHGVRRR PWGRYAAEIR NPNTKQRHWL GTFDTAEEAA  60
LAYDISSIAF CGIENARTNF VYPFMSFPSP SSQQPPSPPP PPPPPPPSTP ELEVVENEED  120
DNDNDDESLV IASILQSFRH SNTLDKLAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-151472564Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073183.18e-77ethylene-responsive transcription factor LEP-like
TrEMBLA0A1U7WR452e-73A0A1U7WR45_NICSY; ethylene-responsive transcription factor LEP-like
STRINGXP_009781053.13e-74(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.19e-27ERF family protein