PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf19213g01005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 288aa MW: 32104.7 Da PI: 8.0924

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf19213g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	104	125	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C k Fs++ L H++ H Niben101Scf19213g01005.1 104 SCSFCEKKFSTSQALGGHQNAH 125 7******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.14E-5	101	130	No hit	No description
PROSITE profile	PS50157	11.032	103	130	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.7E-4	104	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDSISMKKPC SPETSSIPAA SEEIDQNTKK MKGKVVDLES ELKPHELSSA SALLDLKVNN 60 GAANLELNHF NSTSIIKNSA PAGESSYVAP PNKQTPSSET RVLSCSFCEK KFSTSQALGG 120 HQNAHKQERD LAKRRNELVD VVSPFGPPKY YHPYYNPYSS YTTHLPFHGS FTRRSSLGVQ 180 GDSSAIHKPS PYIPWSFFSG YNYRFNPQKW SSSRSSLFRI ENHGIGGAPL ENSLKFENKN 240 SAKSFSVRDL PVKIDDNRSE NNKRKIGLGE EDAEKNEEET EIDLDLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600727.2	1e-151	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S3X541	1e-147	A0A1S3X541_TOBAC; zinc finger protein 4-like
TrEMBL	A0A1U7XKL7	1e-147	A0A1U7XKL7_NICSY; zinc finger protein 4
STRING	XP_009600727.1	1e-148	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	1e-20	zinc finger protein 3