PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf19266g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 289aa    MW: 30081.9 Da    PI: 5.3078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf19266g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-203079255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +gr++AeIrd s+   + r++lg+f+ aeeAa+a++aa+++++g
  Niben101Scf19266g00006.1 30 HYRGVRKRP-WGRYAAEIRDSSK---NSRVWLGTFDKAEEAARAYDAAAREFHG 79
                              69*******.**********543...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-373093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-303087IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-223088IPR016177DNA-binding domain
CDDcd000184.74E-173087No hitNo description
PfamPF008474.0E-133079IPR001471AP2/ERF domain
PROSITE profilePS5103222.83087IPR001471AP2/ERF domain
PRINTSPR003671.8E-103142IPR001471AP2/ERF domain
PRINTSPR003671.8E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAQNAIGDAA LTLAIPAAEN MKSGISKEIH YRGVRKRPWG RYAAEIRDSS KNSRVWLGTF  60
DKAEEAARAY DAAAREFHGT KAKTNFPPPT VIKDSSPGPL NLNLGGGSSV GSGGSFTYLK  120
QNNLNLGGGS SVGSAASFTY LKQNHQFPDF LAAGSSAPPS ARDYQYLEAL TGAEVSHGDP  180
SSQRGTVAFL GGGDSVSGCG IQTESESSSV PNYNFADALT GAEVSHGDPS SQRGTVAFLG  240
GGDSVSGCGI QTESESSSVP NYNFADVNQP TITTNCLNLD LNLPPPYNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-213087260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A5e-2031871572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591053.11e-129PREDICTED: ethylene-responsive transcription factor 8-like
RefseqXP_016506469.11e-129PREDICTED: ethylene-responsive transcription factor 8-like
TrEMBLR4WAR71e-128R4WAR7_TOBAC; Ethylene response factor #206
STRINGXP_009591053.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1519557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.17e-23ethylene responsive element binding factor 4