PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf19266g01015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 224aa MW: 24224.1 Da PI: 10.3729

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf19266g01015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.2e-19	27	76	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp g+++r++lg+f+ta eAaka++ a++ ++g Niben101Scf19266g01015.1 27 HYRGVRKRP-WGRYAAEIRDP---GQKTRVWLGTFDTAVEAAKAYDTAARLIRG 76 6******.******8...557********************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	7.19E-21	27	84	IPR016177	DNA-binding domain
CDD	cd00018	2.83E-29	27	83	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-30	27	84	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-37	27	90	IPR001471	AP2/ERF domain
Pfam	PF00847	6.4E-12	27	75	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.418	27	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-10	28	39	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-10	50	66	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MAENGHLART VAVPTANGGE VRSDEVHYRG VRKRPWGRYA AEIRDPGQKT RVWLGTFDTA 60 VEAAKAYDTA ARLIRGRRAI TNFSPTTEDN LMNNRDLMAK LSTRNHVNIN INNHGPIQNS 120 DIGSSSGGGG TGRIPLANQN PQSRHFPVTG CCASLQLARD RYYVEALTRA GVIINRDTSN 180 PKKTIDFIGG GVNCGSGRGV QSEPPTTSPR PHNLELTLAP PGNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-20	27	83	5	62	ATERF1
3gcc_A	8e-20	27	83	5	62	ATERF1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226403.1	1e-129	PREDICTED: ethylene-responsive transcription factor 4-like
Refseq	XP_019242362.1	1e-129	PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBL	A0A1J6JLH8	1e-128	A0A1J6JLH8_NICAT; Ethylene-responsive transcription factor 4
STRING	XP_009591054.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15350	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	3e-33	erf domain protein 9