PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf19383g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 430aa    MW: 49066.6 Da    PI: 4.7788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf19383g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.33.1e-23141373128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeekew.yfFskrdkkyatgkrknr.atksgyW 83 
                               +GfrF+Ptdeel+ +yL k v+ k+ ++ ++i+  d+y   +Pwd+  +++ ++++++ yfF+k ++++a g+r +r  +  g W
  Niben101Scf19383g00001.1  14 VGFRFRPTDEELI-RYLLKFVSCKNYSC-DHIRVEDLYGNkKPWDIFeSNFLGDDTKLnYFFTKLKRTKAGGSRFSRrLIGGGCW 96 
                               7************.9**********999.88**99*996549****6345555666556***************9997999**** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k   k+k+v++ +++lvg kk++ + ++     ++  W m+ey+l
  Niben101Scf19383g00001.1  97 KGLDKHKSVFK-GSKLVGSKKSFRYLEK---GIKNFVWNMKEYSL 137
                               **********9.9************943...334689******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-2510164IPR003441NAC domain
PROSITE profilePS5100526.07812164IPR003441NAC domain
PfamPF023651.9E-1414137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MTSSSHNYGP NEVVGFRFRP TDEELIRYLL KFVSCKNYSC DHIRVEDLYG NKKPWDIFES  60
NFLGDDTKLN YFFTKLKRTK AGGSRFSRRL IGGGCWKGLD KHKSVFKGSK LVGSKKSFRY  120
LEKGIKNFVW NMKEYSLNDN ILKVLRQRNI IQHEDYVLCC IKRKSVHAND HKELGDDMEI  180
ADSGNNVVDV LNTMLSPTQE HELDYVPSSS QDQGTGVHDL CPSNQFSSSE HNNAFDQLQL  240
VDVQAQNIKE RAPSVQNHVE YVGSSSTTSN QFTYYSLDNN DFQLQQDHSN IECDDRATVS  300
STFVEIMNNI DRVDWKVYEY MGSLVAEKSK PQLPICIDEQ NIMCPMAQGS STAMVNEENN  360
NAGFVSDQWS KEQVHNIEEK EPITFTDMLT SSDYYAESSL VISSDECFTM EELLVSDDVI  420
AADLGWMPTQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798779.10.0PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A1U7YHQ50.0A0A1U7YHQ5_NICSY; putative NAC domain-containing protein 94
STRINGXP_009798779.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10426625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-20NAC domain containing protein 2