PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf20652g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 132aa    MW: 14877.5 Da    PI: 8.4046
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf20652g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702546.2e-1793125335
                    DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdC 35 
                               +g+++CqdCGnqa+kdC h+RCRtCC+ rgf+C
  Niben101Scf20652g01005.1  93 QGNVNCQDCGNQARKDCPHSRCRTCCRGRGFQC 125
                               7899***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.2E-1395125IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-1397125IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSWFFSLGGG KEQEPEELAT NNLSLFKNEE IYNKGFKLWQ QLQQQRQQQN QEQDRVDFSI  60
CGGPASSSTP SNNNSLGFRV MNMRGGGSRS GDQGNVNCQD CGNQARKDCP HSRCRTCCRG  120
RGFQCLPIRI YS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628417.16e-61PREDICTED: protein SHI RELATED SEQUENCE 5-like
RefseqXP_016510843.16e-61PREDICTED: protein SHI RELATED SEQUENCE 5-like
TrEMBLA0A1S4DBW91e-59A0A1S4DBW9_TOBAC; protein SHI RELATED SEQUENCE 5-like
STRINGXP_009628417.12e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.25e-17SHI-related sequence 7