PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf20728g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 348aa    MW: 39994.9 Da    PI: 6.8951
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf20728g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.77.6e-33110211189
                       TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaess 78 
                               a+g+kdrhsk++T+ g+RdRRvRls ++a++f+d+qd+LG+d++sk i+WL+++ak+ai++l ++       + +s +++ +++ 
  Niben101Scf20728g00002.1 110 ATGRKDRHSKVSTASGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSKGIDWLIKEAKAAIDALENNpfqvlsgKIDSTNKALNWQT 194
                               589**************************************************************88888874444444444454 PP

                       TCP  79 sssasnsssg......k 89 
                               +++++++++       k
  Niben101Scf20728g00002.1 195 VNAEKEEGQFvleqspK 211
                               44444222223332220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-30111214IPR005333Transcription factor, TCP
PROSITE profilePS5136929.711113171IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNHQLQVLDE EYRSSEEEEK EKEEDVLQEN ILQIHYQNHH FHQLSQTHAN SHYAKWANFT  60
PPSATLLPKH QNNAQCPSYK QEIKNVSPKK KPKRTNTDVI EVHRSRIVRA TGRKDRHSKV  120
STASGPRDRR VRLSPNTAIQ FYDVQDRLGY DRPSKGIDWL IKEAKAAIDA LENNPFQVLS  180
GKIDSTNKAL NWQTVNAEKE EGQFVLEQSP KVSQEYSDTP KYECGVHNDN PIGNLSLFSS  240
VNDAKIQSVS DFQRYQRGHF QSEIKNQAQG SFYNFQPSQD QSIVFSTNSN LELREDSTFS  300
FLSHNFPSVL GQNQLFNHRE PLQSSFPFST QFQTSSYANN EFSSDGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-18118171154Putative transcription factor PCF6
5zkt_B1e-18118171154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443396.10.0PREDICTED: transcription factor TCP3-like
TrEMBLA0A1S3XTX70.0A0A1S3XTX7_TOBAC; transcription factor TCP3-like
STRINGXP_009771449.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-35TCP domain protein 10