PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf20949g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 110aa    MW: 12373.1 Da    PI: 10.555
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf20949g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.15.4e-191353141
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                              k+i+n+  r+vtfskRr g++KKA+EL++L +ae+ +++ s
  Niben101Scf20949g00001.1 13 KPIDNQNSRHVTFSKRRLGLFKKASELCILSGAEIVILVQS 53
                              78************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-22565IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.114553IPR002100Transcription factor, MADS-box
CDDcd001206.89E-22653No hitNo description
SuperFamilySSF554551.31E-19684IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-11727IPR002100Transcription factor, MADS-box
PfamPF003191.4E-171559IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-112742IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MKNTQGRRKI AIKPIDNQNS RHVTFSKRRL GLFKKASELC ILSGAEIVIL VQSLKRQRLL  60
AFGHPSANYL TGKSSSSSST VDQLNVQQNN QYYSQICKEL EAEKGKNGDY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234246.12e-56PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1J6L6Y03e-55A0A1J6L6Y0_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009761268.12e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-20M-type_MADS family protein