PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf21083g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 93aa    MW: 10593.2 Da    PI: 10.686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf21083g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000383550116
                              EEETTTTEEESSHHHH CS
                   zf-C2H2  1 ykCpdCgksFsrksnL 16
                              ++C+ C+k+Fs+   L
  Niben101Scf21083g00004.1 35 FECKTCNKRFSSFQAL 50
                              89*********97777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.0E-42449IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139122.2E-103556IPR007087Zinc finger, C2H2
PROSITE profilePS501578.853562IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MKRSREEDSD VEAQAMANCS MLLSRLNDTI KTSSFECKTC NKRFSSFQAL GGHRTSRKSL  60
RSSSMVAKSK SKITKNNMHQ WSICGMEFFM GRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594751.23e-47PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016508476.13e-47PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A1S4D5237e-46A0A1S4D523_TOBAC; zinc finger protein ZAT11-like
STRINGXP_009594751.11e-46(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-19C2H2 family protein