PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf21140g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 712aa    MW: 79981.6 Da    PI: 6.0282
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf21140g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.11.1e-20580676295
                               EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                               +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv+ ngL+egDf+v
  Niben101Scf21140g00009.1 580 QKVLKQSDVGNLGRIVLPKKEAESHlpELESRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIV 663
                               79*************************999999********7778*******99777777777777.****************** PP

                               EEE-SSSEE..EEE CS
                        B3  82 Fkldgrsefelvvk 95 
                               ++ d  ++++++++
  Niben101Scf21140g00009.1 664 LYADT-KCGKYLIR 676
                               **544.88887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-28571684IPR015300DNA-binding pseudobarrel domain
CDDcd100151.57E-34577678No hitNo description
SuperFamilySSF1019367.46E-23578673IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-20579681IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701579681IPR003340B3 DNA binding domain
PfamPF023626.5E-17580675IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MKRGLEYHHG KQDLEDGLEN VMVAMDDIQR NHETTEFVPM EEEQVLGSIV GDTEIFLDGD  60
GSHSHHHHHH HHLDVNDTSI FSTNFLPLPD FPCMSSSSST SSAPTALSKP FPTSSSSSSA  120
SSSSNSASWA LLKSDAEEDV HKNIQPPALS STTSMELSLP PPEDDVDCLN VMEDLGYMDL  180
IDGTEFWDPC TLFRSDNQNP QDYNMSDQSF QLSQDHQQNQ ESKPQQLEEE GDDDQNDSLS  240
FFTGNSELAV IFFEWLKQNK DYISAEDMRS IKLKRSTIES ASKRLGGTKE GKKQLLRLIL  300
EWVEQCQLQK KAAATAASDS PCQYQESHLH DSNPNPNSSF QYNNTVASDP NACFYTSPWM  360
PTPSPYIPGA DPFYPTPIAP GYAGDPYSNV PSFTNMEYQT MESAQSWPQS QFSTIAASQY  420
NPFPENESNL ATQANPQGLF SQYPYQLYDG NGERLVRLGS SATKEARKKR MARQRRLPSH  480
HYRHHSHQTQ HQSQSSDQSL RIVGENCTVS PANNPGNWVY WPSAASSPMM MVPPPEAPQP  540
HPMTERPGIQ HQNHQKHASA DKRSQSQNWK SEKNLKFLLQ KVLKQSDVGN LGRIVLPKKE  600
AESHLPELES RDGISIAMED IGTSRVWNMK YRFWPNNKSR MYLLENTGDF VRTNGLQEGD  660
FIVLYADTKC GKYLIRGVKV RQTGPKAEGK KPAKKNVRNS SSAIALMKQL AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-355756821108B3 domain-containing transcription factor FUS3
6j9b_D1e-355756821108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238002.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBLA0A1J6KAN40.0A0A1J6KAN4_NICAT; B3 domain-containing transcription factor abi3
STRINGXP_009792996.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-133B3 family protein