PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf21969g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 300aa MW: 32975.4 Da PI: 8.4152

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf21969g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	198.6	2e-61	98	233	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 +g+++CqdCGnqakkdC h+RCRtCC+ rgf+C+thvkstWvpaa+rrerqqq + +++kr+r++ + s+l+ Niben101Scf21969g00004.1 98 QGNVNCQDCGNQAKKDCPHSRCRTCCRGRGFQCQTHVKSTWVPAARRRERQQQFSE-----------NHPKRPRDN--ISGSSLA 169 7899********************************************988654...........578999997..6788999 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t+l++++s+ s++P+evss+avfrcv+vs+v+d+e+++aYqtav+igGh+fkG+LydqG+++ Niben101Scf21969g00004.1 170 YTRLPTTSSE---VGSHFPPEVSSPAVFRCVKVSGVEDAEQHYAYQTAVNIGGHIFKGMLYDQGPDQ 233 9999998766...6678**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.8E-57	100	232	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.2E-25	102	144	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.2E-27	183	231	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSWFFSLGGG KEQEQEELAT NNLLLFKNEE IYNKGFKLWQ QLQQQRQQQN QEQDHVDFSI 60 CVGPASSSKP SNNNSNSCRS LGFRSMNMRG GGSSSGDQGN VNCQDCGNQA KKDCPHSRCR 120 TCCRGRGFQC QTHVKSTWVP AARRRERQQQ FSENHPKRPR DNISGSSLAY TRLPTTSSEV 180 GSHFPPEVSS PAVFRCVKVS GVEDAEQHYA YQTAVNIGGH IFKGMLYDQG PDQSRYSSSG 240 GGAGESSSQP LNFIAGATAA VSSQQQQGVS IAMFDPASIY PNHQLSAFMA GTQFFPPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628417.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Refseq	XP_016510843.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9FXH7	3e-72	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A1S4DBW9	0.0	A0A1S4DBW9_TOBAC; protein SHI RELATED SEQUENCE 5-like
STRING	XP_009628417.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-65	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]