PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf22360g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 37971.3 Da    PI: 5.2455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf22360g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-15131182155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  Niben101Scf22360g00006.1 131 QRMTHIAVERNRRKQMNEYLSVLRTLMPQS---YVQRGDQASIVSGAINYVKELE 182
                               79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.64E-15129186No hitNo description
Gene3DG3DSA:4.10.280.108.6E-15129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.005130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-11136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALEAVTQQQ QYLYALLGTA NWDGGSGSCP GFDYHNNEPF EFLDNNDQNV GAAQEYDDYS  60
NWNLPPPLLV DYSQNDFNQW GQNSSTHVLD PYFTIPDQLP QLESPVEISS TTRQRRRRTR  120
SKKNQEEIES QRMTHIAVER NRRKQMNEYL SVLRTLMPQS YVQRGDQASI VSGAINYVKE  180
LEHQLQFLCG QKHLNDKKLQ DVNGETSPFS EFFSIPQYST TMTAATSENG ASGNEYYTRN  240
QQLPATADIE VTMVENHANL KIRSKRRARL LPRIISGLES LRLSVLHLNV SKVDQFVLCS  300
LSLKVEEDCK LSSVEDIAAV VNQILGRIHE EAY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112119RQRRRRTR
2131142RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258700.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T46e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A314LGS00.0A0A314LGS0_NICAT; Transcription factor bhlh96
STRINGXP_009803283.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]