PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf22367g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 499aa MW: 56238.4 Da PI: 7.906

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf22367g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	21	71	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ q+e Le+++++++yp+++++ eLA++lgLte+qV+ WF+ rR k+k+ Niben101Scf22367g00001.1 21 KTRAQIEGLEKFYKEHKYPTESMKSELARSLGLTEKQVSGWFCHRRLKDKR 71 6899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-20	3	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-16	7	72	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	12	72	IPR001356	Homeobox domain
SMART	SM00389	1.3E-18	14	76	IPR001356	Homeobox domain
CDD	cd00086	8.73E-16	16	71	No hit	No description
Pfam	PF00046	8.2E-16	20	71	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MHSEDDKGHT EKNKTRIKVI KTRAQIEGLE KFYKEHKYPT ESMKSELARS LGLTEKQVSG 60 WFCHRRLKDK RLLSRETYAN GRQDRSSGVI QDRGSGFRQD SCGSTKQEDD KNFDHREVES 120 RRLTAPEVSA AGVTYEVGTQ YRAESNLMDD TPSGSSSSLR DACFSQNVES FDMATSRYLS 180 SNVPTDLKSV KPRTCPSGYL KVKGQVENAA ITAVKRQLGS LYRQDGPPLG VEFDPLPPGA 240 FESSVQNLVD EPEYTGEPVP ALTPDFSKVY KQSNSCIGHG SISKTNSHVP DLEGASFKKS 300 LKSAHTEYYF NEKPGENSSI HDGDCYYLGR DLSIDMHKGS GREVAVDGRC NYKYMAKHDG 360 AEIRTSTSSS SGFRSPCTGK VNGEQVKPRF TSCNEMNLKI MEEEDLERNP SNFVLKGSKH 420 RYCSERVLSN KVEKDYINVD RSSVDENYNL DRVNIPWENE MRVTFLAHAA KRARDEDPNH 480 QEYPRNASGT RCHPRQIIR

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MHSEDDKGHT EKNKTRIKVI KTRAQIEGLE KFYKEHKYPT ESMKSELARS LGLTEKQVSG  60
WFCHRRLKDK RLLSRETYAN GRQDRSSGVI QDRGSGFRQD SCGSTKQEDD KNFDHREVES  120
RRLTAPEVSA AGVTYEVGTQ YRAESNLMDD TPSGSSSSLR DACFSQNVES FDMATSRYLS  180
SNVPTDLKSV KPRTCPSGYL KVKGQVENAA ITAVKRQLGS LYRQDGPPLG VEFDPLPPGA  240
FESSVQNLVD EPEYTGEPVP ALTPDFSKVY KQSNSCIGHG SISKTNSHVP DLEGASFKKS  300
LKSAHTEYYF NEKPGENSSI HDGDCYYLGR DLSIDMHKGS GREVAVDGRC NYKYMAKHDG  360
AEIRTSTSSS SGFRSPCTGK VNGEQVKPRF TSCNEMNLKI MEEEDLERNP SNFVLKGSKH  420
RYCSERVLSN KVEKDYINVD RSSVDENYNL DRVNIPWENE MRVTFLAHAA KRARDEDPNH  480
QEYPRNASGT RCHPRQIIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783344.1	0.0	PREDICTED: uncharacterized protein LOC104231943 isoform X2
Refseq	XP_016443574.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
Refseq	XP_016443575.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
Refseq	XP_016443576.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
TrEMBL	A0A1S3XUM1	0.0	A0A1S3XUM1_TOBAC; homeobox-DDT domain protein RLT1-like isoform X1
TrEMBL	A0A1U7X8T7	0.0	A0A1U7X8T7_NICSY; uncharacterized protein LOC104231943 isoform X2
STRING	XP_009783319.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-70	HB-other family protein