PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf23248g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 228aa    MW: 26459.3 Da    PI: 9.3471
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf23248g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.6e-1735114186
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f k +++s+v++  +l+lp+ f++ h   ++ ++t+tl des ++++ k+  ++++    lt+GW++F  a++L egD++vF+l 
  Niben101Scf23248g00010.1  35 FMKPMIRSNVTAGFWLSLPRFFCQLHF--PRHDTTVTLVDESQEEFKTKYLAERNG----LTGGWRGFSLAHNLVEGDVLVFQLF 113
                               89*********************9996..456789***************555555....***********************75 PP

                               S CS
                        B3  86 g 86 
                               +
  Niben101Scf23248g00010.1 114 R 114
                               4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-2128120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1828120IPR015300DNA-binding pseudobarrel domain
CDDcd100178.41E-2233121No hitNo description
PfamPF023626.4E-1535114IPR003340B3 DNA binding domain
SMARTSM010193.4E-1335128IPR003340B3 DNA binding domain
PROSITE profilePS5086310.61635140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAMMQNLYGR FDLASSAKYR AEEVLSRLST KYPSFMKPMI RSNVTAGFWL SLPRFFCQLH  60
FPRHDTTVTL VDESQEEFKT KYLAERNGLT GGWRGFSLAH NLVEGDVLVF QLFRFCKLKV  120
RTNFLFTDVH IVQVYIVRAN YLAEVDAALV LLHLDGHQKQ IDPAVHQMQD NRSTKQAGIK  180
RQRFSSRRDE DDYSAEENML HKHSHPRNML KDLDLPSKGP KLDTFSCI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258000.11e-142PREDICTED: B3 domain-containing protein At3g19184-like isoform X2
TrEMBLA0A1J6IMH71e-142A0A1J6IMH7_NICAT; B3 domain-containing protein
STRINGXP_009612764.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein