PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf23248g00015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 378aa MW: 42784 Da PI: 6.435

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf23248g00015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52	1.3e-16	84	174	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k ++ps+v+ +l +pkkf++ h ++k+ t++l de+ +++ k+ ++k++ l++GW++F a++L gD+++F+l+ Niben101Scf23248g00015.1 84 FAKFMLPSYVTGGFWLGFPKKFCDCH-LPKHD-DTVVLVDEDEQEYATKYLVNKTG----LSGGWRGFSIAHNLLHGDVLIFQLI 162 8899*****************555.66544.59***********667766....*********************** PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + s+f +v ++r+ Niben101Scf23248g00015.1 163 QPSKF--KVYIIRE 174 99999..8888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-19	78	175	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-23	78	175	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.91E-24	82	173	No hit	No description
PROSITE profile	PS50863	12.153	84	175	IPR003340	B3 DNA binding domain
SMART	SM01019	5.9E-21	84	175	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-14	84	174	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MYSSKKCPIL SSSKKKALEI KKKLLRKRAL GPCNTYKRGN GDNKKVQLCP EKKGNKPRTV 60 DANSSSMLRA EEVQANLPSP FPSFAKFMLP SYVTGGFWLG FPKKFCDCHL PKHDDTVVLV 120 DEDEQEYATK YLVNKTGLSG GWRGFSIAHN LLHGDVLIFQ LIQPSKFKVY IIRENALTEL 180 DGAISLLNLD FHARPIISDQ IQDMKICEAK ERKYLELPVL DTHQDDKQEI DGAISLLKLD 240 FRARPIKSDP YEEMKFCEAK EEKYLEPSVI DIDQDDKNEE TVVVQNVDHG LASEQCGNDS 300 DNSSEALDFQ NVRLEFKDVK GFSGFNILID NLIIDSEIPA HIRTKYYDLC CTQKSFLHDH 360 LLGGLNCKLA AGMICEHC

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MYSSKKCPIL SSSKKKALEI KKKLLRKRAL GPCNTYKRGN GDNKKVQLCP EKKGNKPRTV  60
DANSSSMLRA EEVQANLPSP FPSFAKFMLP SYVTGGFWLG FPKKFCDCHL PKHDDTVVLV  120
DEDEQEYATK YLVNKTGLSG GWRGFSIAHN LLHGDVLIFQ LIQPSKFKVY IIRENALTEL  180
DGAISLLNLD FHARPIISDQ IQDMKICEAK ERKYLELPVL DTHQDDKQEI DGAISLLKLD  240
FRARPIKSDP YEEMKFCEAK EEKYLEPSVI DIDQDDKNEE TVVVQNVDHG LASEQCGNDS  300
DNSSEALDFQ NVRLEFKDVK GFSGFNILID NLIIDSEIPA HIRTKYYDLC CTQKSFLHDH  360
LLGGLNCKLA AGMICEHC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257389.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A1J6HVB7	0.0	A0A1J6HVB7_NICAT; B3 domain-containing protein
STRING	XP_009778963.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-40	B3 family protein