PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf23282g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 244aa    MW: 27790.8 Da    PI: 8.3497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf23282g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002294116123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C k F ++  L  H++ H
  Niben101Scf23282g01002.1  94 FECQYCFKQFANSQALGGHQNAH 116
                               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.29E-692121No hitNo description
Gene3DG3DSA:3.30.160.609.3E-592120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42794121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTKDVSSTFH SPLYNNGENY ESSSKSCVEN KRLKLFGFEL EPSPKIQKNS KEDQGDHESV  60
NSSSASTVSS GRDQEKLLPA SNSKPDSEEI MKKFECQYCF KQFANSQALG GHQNAHKKER  120
MRKKRLQLQA RKASLSCYLQ PFQNNNNNIS YQFYDPNSFF GNSDQFTVYD ESQISFSPYD  180
QESQVLVGKW PFQQDSCMFT LTHGEKSREK YSRPAAVMKP ETLPNSASKQ KCNSLDLQLG  240
LSLH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789685.11e-161PREDICTED: zinc finger protein 5-like
RefseqXP_016455528.11e-161PREDICTED: zinc finger protein 5-like
TrEMBLA0A1S3YTQ91e-160A0A1S3YTQ9_TOBAC; zinc finger protein 5-like
TrEMBLA0A1U7XT841e-160A0A1U7XT84_NICSY; zinc finger protein 5-like
STRINGXP_009789685.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.14e-19zinc finger protein 5