PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf24238g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 244aa    MW: 26939.9 Da    PI: 8.7215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf24238g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-114873227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              +++ C+++ rtG C++G++C+F+H+p
  Niben101Scf24238g00010.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                              6899********************97 PP
2zf-CCCH41.22.8e-1393118227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++C+++++tGtCk+G++CkF+H++
  Niben101Scf24238g00010.1  93 GQPECQYYLKTGTCKFGATCKFHHPK 118
                               5799********************96 PP
3zf-CCCH39.78.4e-13141164427
                               ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                               ++C +++rtG+Ck+G++CkF+H++
  Niben101Scf24238g00010.1 141 AECAYYMRTGQCKFGSTCKFHHPQ 164
                               79********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4834674IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-65174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-45272IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-591118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.62991119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-792120IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-1093118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-597117IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7138165IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5143163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLAIA TARMKVEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK  120
AGIAGRVTLN VLGYPLRANE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPAYPP  180
VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQGV VSVPGFAYSV SFHMIPCICL  240
LSMA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611380.11e-166PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
RefseqXP_016481312.11e-166PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
SwissprotQ9SWF91e-116ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4AXF51e-165A0A1S4AXF5_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X4
STRINGXP_009793876.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-109zinc finger protein 1