PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf24249g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 259aa MW: 29018.1 Da PI: 6.406

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf24249g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.3e-05	57	105	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r+ + erE+ R+++N+ f L l + + + Ka+iL ++ +++k+ Niben101Scf24249g00001.1 57 KRVHKAEREKLKREHLNELFLDLANALELS----EQTNGKASILNETARFVKD 105 79999********************998....68899999*99999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.22E-10	54	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-7	54	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.49E-5	54	117	No hit	No description
PROSITE profile	PS50888	10.779	56	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSAESPTSSA ENGGIAVETS PYGSVDLVHF YSMLCGLSKM MSHPSPSCKK IQKKVPKRVH 60 KAEREKLKRE HLNELFLDLA NALELSEQTN GKASILNETA RFVKDMISQI KHLKRENTAL 120 LSESQYLSME KKELQDDNSA LEAQIGKLEG EVKEKVAETN LDLNLSLPET QLPQLASHVT 180 DNFLRLPGPE HPFQQIQMMN PLYVVPLNST PQAYPELDAA MPTYSVKKPQ ARYPTPADVW 240 PSQILEKRPQ LGQEVQNSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267673.1	1e-154	PREDICTED: transcription factor bHLH47-like
Refseq	XP_019267674.1	1e-154	PREDICTED: transcription factor bHLH47-like
Refseq	XP_019267675.1	1e-154	PREDICTED: transcription factor bHLH47-like
TrEMBL	A0A314KZM1	1e-152	A0A314KZM1_NICAT; Transcription factor bhlh47
STRING	XP_009592394.1	1e-150	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	9e-43	bHLH family protein