PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf24496g01001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 661aa MW: 72453.2 Da PI: 7.9084

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf24496g01001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.5e-30	302	361	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Niben101Scf24496g01001.1 302 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAqSCPVRKQVQRCAEDMSILITTYEGTHNHP 361 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-31	288	363	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	295	363	IPR003657	WRKY domain
PROSITE profile	PS50811	28.805	297	363	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	302	362	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	303	361	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MPYMEAALRN SIHGAVVKEE NKNKAESSPD RESCAENIFL KVGKGRRERE DDKSKPSSPQ 60 HKDFTLDYTE CIYRFFLLFK QYLTLMLQLG AAVMVKRERS PSELNSMASS STQKEQNDKL 120 ASAKIEMREV MEENQRLRTH LDRIMKDYRN LQMQFHDIAQ KEAEKSSSTV NTTHHESDQE 180 ADQLVSLCLG RTSSDMKKEE LSKIFSKDKA HYNNNEEEEH KAGGLTLRLD CKFEVSAKTS 240 QTTESSPVNL SPENSLEEIK EENGETHKIL KTMRNGDDDV SQQNPTKRAR ASVRVRCDAP 300 TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV AQSCPVRKQV QRCAEDMSIL ITTYEGTHNH 360 PLPLAATAMA SATAAAASML LSGSSSSSDP SPQVTAAVAT TTTSANLNGL NFYLSDNSKS 420 KPPYYFPNSS FSSSSAPNSL PTITLDLTST SSSSSLSHLT RIGSTSTFPP ARYNNNSSAN 480 VLNFSSLESN PLPVSWSNGA LNYANQAYNK NQNIASLAFS SRTTQENLFQ SYLQRNNTQS 540 ASLPPDAISA ATKAITSDPN FHSALAAALT SIIENTGIGN NSAGHNNLNH VTEPFPVLSS 600 LPSSSNPNKC SSTFLNTPTS SSANTQSANN NLVFFTQPNS SLPFSSAPKG KSTSPSDNKF 660 D

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MPYMEAALRN SIHGAVVKEE NKNKAESSPD RESCAENIFL KVGKGRRERE DDKSKPSSPQ  60
HKDFTLDYTE CIYRFFLLFK QYLTLMLQLG AAVMVKRERS PSELNSMASS STQKEQNDKL  120
ASAKIEMREV MEENQRLRTH LDRIMKDYRN LQMQFHDIAQ KEAEKSSSTV NTTHHESDQE  180
ADQLVSLCLG RTSSDMKKEE LSKIFSKDKA HYNNNEEEEH KAGGLTLRLD CKFEVSAKTS  240
QTTESSPVNL SPENSLEEIK EENGETHKIL KTMRNGDDDV SQQNPTKRAR ASVRVRCDAP  300
TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV AQSCPVRKQV QRCAEDMSIL ITTYEGTHNH  360
PLPLAATAMA SATAAAASML LSGSSSSSDP SPQVTAAVAT TTTSANLNGL NFYLSDNSKS  420
KPPYYFPNSS FSSSSAPNSL PTITLDLTST SSSSSLSHLT RIGSTSTFPP ARYNNNSSAN  480
VLNFSSLESN PLPVSWSNGA LNYANQAYNK NQNIASLAFS SRTTQENLFQ SYLQRNNTQS  540
ASLPPDAISA ATKAITSDPN FHSALAAALT SIIENTGIGN NSAGHNNLNH VTEPFPVLSS  600
LPSSSNPNKC SSTFLNTPTS SSANTQSANN NLVFFTQPNS SLPFSSAPKG KSTSPSDNKF  660
D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-19	291	363	6	77	Probable WRKY transcription factor 4
2ayd_A	3e-19	302	363	14	74	WRKY transcription factor 1
2lex_A	3e-19	291	363	6	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800925.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X1
Swissprot	D8VNC6	0.0	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1U7YQ00	0.0	A0A1U7YQ00_NICSY; probable WRKY transcription factor 72 isoform X1
STRING	XP_009800925.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-59	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]