PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf25537g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 229aa    MW: 26519.9 Da    PI: 8.5704
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf25537g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.51.8e-25116177159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               +dDg++WrKYGqK++ ++++pr+Y+rCt++   gC++ k+v+r +e+p ++ +tY g+H+++
  Niben101Scf25537g00002.1 116 VDDGHAWRKYGQKQILNAKYPRNYFRCTHKfdqGCEANKQVQRIQENPPLFRVTYYGHHTCK 177
                               59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-27102177IPR003657WRKY domain
PROSITE profilePS5081120.564111174IPR003657WRKY domain
SuperFamilySSF1182902.75E-25112178IPR003657WRKY domain
SMARTSM007741.9E-38116178IPR003657WRKY domain
PfamPF031063.8E-25117177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MESENYTQSD LEKVTEKLNR GRELTRRLRE MIKKPEARAG DGSVILTEDL VGKIMSSFSE  60
TISILRSNEC SEVSQIVKST EDSSGSCKTS SLKDRRGRYK RRKTLETTIK ETSTLVDDGH  120
AWRKYGQKQI LNAKYPRNYF RCTHKFDQGC EANKQVQRIQ ENPPLFRVTY YGHHTCKTYP  180
KVSQMICDSP TDEDSSLLLN FNSTNNHHHF LDLMVGTVDF MDLSFEFKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-24116177869OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760864.11e-160PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1U7VEW31e-159A0A1U7VEW3_NICSY; probable WRKY transcription factor 70
STRINGXP_009760864.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-43WRKY DNA-binding protein 70