PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf25547g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 216aa    MW: 24184.5 Da    PI: 9.4311
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf25547g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1794.4e-5692184193
                     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                               vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+ tlGfedy+eplkv
  Niben101Scf25547g00008.1  92 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMETLGFEDYIEPLKV 176
                               69*********************************************************************************** PP

                     NF-YB  86 ylkkyrel 93 
                               yl++yre+
  Niben101Scf25547g00008.1 177 YLARYREV 184
                               ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-5387184IPR009072Histone-fold
SuperFamilySSF471133.42E-3995184IPR009072Histone-fold
PfamPF008081.5E-2898162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.2E-21126144No hitNo description
PROSITE patternPS006850129145IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.2E-21145163No hitNo description
PRINTSPR006158.2E-21164182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
KKTKRERSWN QTNGVDRANS KTLPSSQSSP FSHFLQRPIL TFLLQSFILL SSRPNYKSPG  60
MADGQGSSRS PASPNGGGSH ESGGDQSPRS NVREQDRFLP IANISRIMKK ALPANGKIAK  120
DAKETVQECV SEFISFITSE ASDKCQKEKR KTINGDDLLW AMETLGFEDY IEPLKVYLAR  180
YREVMITAFF VSAFPCDPVQ TEYKLMDLFF CGVPAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4693183393NF-YB
4awl_B3e-4693183494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4693183494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B3e-4692183192Transcription factor HapC (Eurofung)
4g92_B3e-4692183192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767971.16e-86PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
RefseqXP_009767972.16e-86PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2
RefseqXP_016510778.16e-86PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2
RefseqXP_016510785.16e-86PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X3
SwissprotQ8VYK41e-68NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLM0ZNB57e-89M0ZNB5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000043661e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-71nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]