PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf25721g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 558aa    MW: 62693.6 Da    PI: 7.148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf25721g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Niben101Scf25721g00003.1 14 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                              678*******************************************97 PP
2Myb_DNA-binding43.57.3e-1467109145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg ++ eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+
  Niben101Scf25721g00003.1  67 RGTFSLEEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109
                               899*******************.*********.*********998 PP
3Myb_DNA-binding43.57.3e-14203245145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg ++ eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+
  Niben101Scf25721g00003.1 203 RGTFSLEEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 245
                               899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.063965IPR017930Myb domain
SuperFamilySSF466893.91E-2912108IPR009057Homeodomain-like
SMARTSM007173.3E-131363IPR001005SANT/Myb domain
PfamPF002493.2E-151461IPR001005SANT/Myb domain
CDDcd001672.41E-111761No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2465116IPR009057Homeodomain-like
SMARTSM007172.0E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.40566116IPR017930Myb domain
PfamPF002496.9E-1367109IPR001005SANT/Myb domain
CDDcd001671.27E-869109No hitNo description
PROSITE profilePS5129421.285198252IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-20201252IPR009057Homeodomain-like
SMARTSM007172.9E-12202250IPR001005SANT/Myb domain
PfamPF002496.9E-13203245IPR001005SANT/Myb domain
SuperFamilySSF466895.91E-13203259IPR009057Homeodomain-like
CDDcd001671.27E-8205245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLINHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SLEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS EVENEEKVSV ISKNNEKASE GSSELNFFEV HENSNYGIKS EKPKPSSATT  180
MDRYSNNMSA AVAPPTHEFF LNRGTFSLEE ENLIIELHAV LGNKWSQIAA RLPGRTDNEI  240
KNLWNSSIKK KLRQKGIDPN THKPLSEVEN EEKVSVISKN NEKASEGSSE LNFFEVHENS  300
NYGIKSEKPK PSSATTMDRY SNNMSAAVAP PTHEFFLNRF VNTHETSTTS CNKPLDLASY  360
LSFQQLNYGS NIGLSMSPNT NHLLFNSNNS KNSEMVSHQF NSSMTTNDNI LPSISNSILT  420
SPIAAASNNS IGTFTSNGSS TSIDQLQKNS TFFDNNAFSW GAADCGKSEK EAANINPSEI  480
DPEDIKWSEY LHTQFLPANS IHNHQITQDV YSEKSGTQFD TEGSLTWLQN QQQQPSLQTA  540
DLYSKHFQRI PDAFGQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241228.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8VZQ22e-86MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A1J6JPA40.0A0A1J6JPA4_NICAT; Transcription factor myb86
STRINGXP_009762834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.19e-89myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]