PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf25777g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 205aa    MW: 23134.4 Da    PI: 4.3822
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf25777g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.3e-094384445
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
                  Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45
                               ++f++eq++ Le++Fe++ ++  +++ +LA++lgL+ rq +
  Niben101Scf25777g00001.1 43 TRRFSDEQIKSLETMFENETKLEPRKKLQLARELGLQPRQLQ 84
                              469************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-82184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-102784IPR009057Homeodomain-like
PROSITE profilePS500718.6163784IPR001356Homeobox domain
PfamPF000461.8E-64384IPR001356Homeobox domain
CDDcd000862.61E-64485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MFDVGEFSCT SSAAALNSAE CFSSSSFSSL PSSKKKKVNN KNTRRFSDEQ IKSLETMFEN  60
ETKLEPRKKL QLARELGLQP RQLQKLNDLM QKSEKEGGQY CSIGVDQESY NRHDNTIKSK  120
EMDGKPSLSF DLSEHGVNGV ISDDDSSIKA DYFGLDEESD HLLKMVEAGD SSLTSPENWG  180
TLEDDGLLDQ QPNSCNYDQW WDFWS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226444.11e-116PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A314KRV91e-115A0A314KRV9_NICAT; Homeobox-leucine zipper protein athb-7
STRINGXP_009792428.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-32homeobox 7