PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf26748g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 196aa    MW: 22140.2 Da    PI: 4.6845
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf26748g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP349.7e-113710736106
                       TCP  36 qdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa.kskksqksaas 106
                                d+LG+ ++sk ++WLl+  k++i+el+ ++ +++s+  ++++   + ++ss ++ ++   ++++++++++s
  Niben101Scf26748g00005.1  37 EDRLGLGQPSKVVDWLLNITKQEIDELPPLQRPQKSFN-QSHQIDDQYFDSSLREISKGItTTNEQENQESS 107
                               49****************************66666333.333333333333333333333233333333332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-637104IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSIRRSQKAP TMANFQELHL AQDNIHGQAL TIQESFEDRL GLGQPSKVVD WLLNITKQEI  60
DELPPLQRPQ KSFNQSHQID DQYFDSSLRE ISKGITTTNE QENQESSQPS FLGMLNNPNP  120
MPFNSYYSSE PNTFSIGTED SQNNASGNIT MPFCSGSQLY LHPTGTTLTC SLDMISNTSY  180
HQTKGFHSRE DTDHYS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009627677.17e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-11TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5