PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf26781g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 304aa    MW: 33954.6 Da    PI: 9.601
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf26781g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-12556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  Niben101Scf26781g00006.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56
                              79***********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.042161IPR017930Myb domain
SuperFamilySSF466896.45E-15258IPR009057Homeodomain-like
SMARTSM007171.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-14556IPR009057Homeodomain-like
CDDcd116601.31E-20657No hitNo description
PfamPF139212.0E-8862No hitNo description
SMARTSM005264.6E-15115180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.108.7E-13117178IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.939117212IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466896.45E-15119151IPR009057Homeodomain-like
PfamPF005384.0E-10120178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA  60
NGQGPRDKSR TQKVKADAPA APLLITQAPV SSTPVLQDAA ADTVMEDSSK CALDGKTASK  120
YNQMIYDALS SLKEPNGSDT STIVNFIEQR HEVPQNFRRL LSSRLRRLVQ QDKLEKVTLF  180
YSHLSVGILV TLSFVTSFGT RRLIENCYRI KKEVLERIKT ATPKQKHVGP RQFPSSNYLG  240
DTVEEAAKTA VYKVAEADNK SFVAAEAAKE EARVSKMAED QDSLLLLAKD IFDRCSQGEI  300
VLMA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757029.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016464151.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_019249157.10.0PREDICTED: telomere repeat-binding factor 4
TrEMBLA0A1J6I4E40.0A0A1J6I4E4_NICAT; Telomere repeat-binding factor 4
TrEMBLA0A1S3ZIH50.0A0A1S3ZIH5_TOBAC; telomere repeat-binding factor 4-like
TrEMBLA0A1U7V4750.0A0A1U7V475_NICSY; telomere repeat-binding factor 4-like
STRINGXP_009757029.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-66MYB_related family protein