PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf27908g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 306aa    MW: 34609.6 Da    PI: 4.5145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf27908g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.3e-07195238654
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               n+  + R +++ +++  L++l+ +      +K + a++L++A+eYIk L
  Niben101Scf27908g01002.1 195 NITSKVRKEKMGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 238
                               566688999**************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.313189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.80E-8195242No hitNo description
SuperFamilySSF474594.32E-13195252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-5195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-11195249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-4199238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MADEFQVGVC GENSWWNSQK NIFGLSPNCA SSIYDDPIGN LIAWPVSDLF DMKTKIDLSS  60
PSSTLDWNHS VNDKLDNTYP SMLQEDINSS LNYQQENGMN CPNKLKRNFS SITEDSSTNS  120
FNKPMNQDFT YYSDLLRTLF DTDSDQQPQQ SFYANNQPIN CTSSINYKQN LDDFTLSLPT  180
LLLKPSSEIN ASLPNITSKV RKEKMGDRIT ALQQLVSPFG KTDTASVLQE AIEYIKFLHD  240
QVNVLRNQYV KKGSPTQLCQ QVKEQEGLKQ ELRSQGLCLV PMSSTFPVTA ETTMDFWTPT  300
FGATFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462078.10.0PREDICTED: transcription factor bHLH112-like isoform X1
TrEMBLA0A1S3ZCE80.0A0A1S3ZCE8_TOBAC; transcription factor bHLH112-like isoform X1
STRINGXP_009802434.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-44bHLH family protein