PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf27945g00015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 632aa    MW: 69173.9 Da    PI: 4.4815
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf27945g00015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50271551128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lp+G+rF+Ptdeelv++yL+ k++g + ++  vi+evdi+k+eP+dLp  + v++++++w+fF++ d+ky++g+r nrat++gyW
  Niben101Scf27945g00015.1  27 LPVGYRFRPTDEELVNHYLRLKINGCDDKV-GVIREVDICKFEPSDLPdlSVVESKDNDWFFFCPIDRKYQNGQRLNRATERGYW 110
                               799************************999.99**************96448888999*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd+++++kkg+++g+kktLv+y grap+g++t+Wv+heyr+
  Niben101Scf27945g00015.1 111 KATGKDRNIVTKKGAKIGMKKTLVYYVGRAPEGKRTNWVIHEYRA 155
                               *******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-5724178IPR003441NAC domain
PROSITE profilePS5100553.21127178IPR003441NAC domain
PfamPF023653.4E-2628154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MAVIAGDNTI AGLPLGQHLG VPPLNTLPVG YRFRPTDEEL VNHYLRLKIN GCDDKVGVIR  60
EVDICKFEPS DLPDLSVVES KDNDWFFFCP IDRKYQNGQR LNRATERGYW KATGKDRNIV  120
TKKGAKIGMK KTLVYYVGRA PEGKRTNWVI HEYRATDKSL DGSHPGQGAF VLCRLFKKNE  180
LKQDENVESS HLDEVQQLVS SPAVGKSPDD EISDAVAPSP IIESDSDKSN PPKISGGETH  240
GTRLPIESRG DSCTVDDTED QMLDITSVPS DPELEKLLEI FCDPSPQHLD WKICSLLHAQ  300
LQVEFGSSYL HAPVINELSH DQKDVQFQNG TNAFDIDEYF NSVLDSSDEL SYEDSGLELR  360
TVQFASNSIN TITTSPVKDF GLCSESKAQV MQEPVGTDLF EPEVLWGDSV QTAPVRVINS  420
IATTVEEAFA TPIVNNDHST GNLDFLNNDY PGDAALSAGS GGMQVPYLLN VEDSSAYRTV  480
GSDSGFGTGI KLRTRLKQNQ PDDKQFGSGM QGTSYRRIRF QMKLQAGSVQ CRVPIDSDKG  540
GANYKGLLTV SESDKFSIED SSTAGAAISN DKTQDTMCKE VKGYGLVAED PSANAQDTDD  600
FSVDEASKTA ALSSFSSSFY ISMALVALRS LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-43161831170NO APICAL MERISTEM PROTEIN
1ut4_B2e-43161831170NO APICAL MERISTEM PROTEIN
1ut7_A2e-43161831170NO APICAL MERISTEM PROTEIN
1ut7_B2e-43161831170NO APICAL MERISTEM PROTEIN
4dul_A2e-43161831170NAC domain-containing protein 19
4dul_B2e-43161831170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254472.10.0PREDICTED: NAC domain-containing protein 14-like
TrEMBLA0A1J6IB690.0A0A1J6IB69_NICAT; Nac domain-containing protein 62
STRINGXP_009760820.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.12e-82NAC domain containing protein 62