PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf28100g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 569aa    MW: 63027.1 Da    PI: 9.9382
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf28100g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30496553359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+v+++tYegeH+h+
  Niben101Scf28100g00004.1 496 DDFSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERALDDPNVLIVTYEGEHDHP 553
                               99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.0E-16444492IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-31483553IPR003657WRKY domain
PROSITE profilePS5081130.274489555IPR003657WRKY domain
SuperFamilySSF1182903.14E-26491554IPR003657WRKY domain
SMARTSM007745.4E-37494554IPR003657WRKY domain
PfamPF031068.1E-26496553IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAVDLMTTGY RNNNTYTSKM EENAMQEAAA GLQSVEKLIR LLSQSQNHLQ KQKQSFQDPT  60
IKTNPTFDFS PDYLAVADTA VNKFKKFISL LDRTRTGHAR FRRGPITTTS SPVLHKEPEL  120
LCPPATSQNR PVEEMLKTEN PQAGSKIYCP TPIQRLPPSP LNHHHHHQQL VKNGSTSERK  180
ESTTTINFAT PSPANSFISS LTGDTESLQP SSMTSNNNTY TSKMEENAMQ EAAAGLQSVE  240
KLIRLLSQSQ NHLQKQKQSF QDPTIKTNPT FDFSPDYLAV ADTAVNKFKK FISLLDRTRT  300
GHARFRRGPI TTTSSPVLHK EPELLCPPAT SQNRPVEEML KTENPQAGSK IYCPTPIQRL  360
PPSPLNHHHH HQQLVKNGST SERKESTTTI NFATPSPANS FISSLTGDTE SLQPSSMTSS  420
GFQITNLSQV SSAGRPPLST SSFKRKCNSM DDSAVKCSSA AGSSGRCHCP KKRKSKVKRV  480
VRIPAISMKM ADIPPDDFSW RKYGQKPIKG SPHPRGYYKC SSIRGCPARK HVERALDDPN  540
VLIVTYEGEH DHPFSITETP PAAIVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21482552271WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255520.10.0PREDICTED: probable WRKY transcription factor 7
TrEMBLA0A1J6I8360.0A0A1J6I836_NICAT; Putative wrky transcription factor 7
STRINGXP_009600900.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-87WRKY DNA-binding protein 7