PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf28369g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 94aa    MW: 11072.2 Da    PI: 10.0824
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf28369g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.2e-19858151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ie+ ++rqvtfskRr  ++KKAeE+ v Cd++v  + fs++g++  ++s
  Niben101Scf28369g01003.1  8 KKIEEITKRQVTFSKRRSSLIKKAEEIAVCCDVDVFFVAFSPSGRISKFCS 58
                              689********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-21159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.965160IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-17222IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-24383IPR002100Transcription factor, MADS-box
PfamPF003192.3E-19956IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-172237IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-173758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MGRKIEMKKI EEITKRQVTF SKRRSSLIKK AEEIAVCCDV DVFFVAFSPS GRISKFCSQK  60
SIEDMIYRYI NLPVERRLTY MNLLLNFLEL KVIS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630259.15e-51PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM462e-22AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A314LD594e-48A0A314LD59_NICAT; Uncharacterized protein
STRINGXP_009630259.12e-50(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.22e-12AGAMOUS-like 67
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]