PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf29015g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 109aa    MW: 12290 Da    PI: 8.8407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf29015g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.41e-16671062159
                               -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +YYrC+s+ gC+++k+vers+++p++++itY++eHnh+
  Niben101Scf29015g00004.1  67 KLGYYRCSSSkGCSARKQVERSRTEPNMFVITYTSEHNHP 106
                               568*****998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.0E-862107IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-1665108IPR003657WRKY domain
PROSITE profilePS5081119.34765108IPR003657WRKY domain
PfamPF031066.1E-1466106IPR003657WRKY domain
SuperFamilySSF1182901.16E-1366108IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MDKKIDVILE KIINKHKENQ ANGKRGNCEF GGEDLINVLL RVMETLQKIG VIAAASFAYS  60
GDSEPLKLGY YRCSSSKGCS ARKQVERSRT EPNMFVITYT SEHNHPWPT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A218VT692e-23A0A218VT69_PUNGR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-25WRKY DNA-binding protein 35