PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf29722g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 333aa    MW: 37867.4 Da    PI: 10.1865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf29722g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-16125214198
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f k ++ps+v    +l lpk+f++ +   +  ++t++l de+g++++  +  ++++    l++GW++F  +++L  gD ++F+l+
  Niben101Scf29722g00001.1 125 FAKCMLPSNVAHGFWLHLPKSFCNMYL--PSHDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSMSHRLLKGDLLIFRLI 203
                               889********************8884..346679***************888888....***********************99 PP

                               SSSEE..EEEEE- CS
                        B3  86 grsefelvvkvfr 98 
                               +  +  l v ++r
  Niben101Scf29722g00001.1 204 EPCK--LQVYIIR 214
                               7443..5787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-19117216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-22119216IPR015300DNA-binding pseudobarrel domain
CDDcd100178.26E-22123214No hitNo description
PROSITE profilePS5086311.998125216IPR003340B3 DNA binding domain
SMARTSM010193.9E-18125216IPR003340B3 DNA binding domain
PfamPF023623.4E-13125214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEDRTLISVK PVTKICKEGQ QKVGPRKLKL TSYSSASTST QTHPSPKIKR VQLDRKNMVP  60
KKRRSVKSKA KQVKSNHPRK AGSKLKGTNK RTRINDLYDD VEAKFSVMER AERVLSSLAD  120
ELPSFAKCML PSNVAHGFWL HLPKSFCNMY LPSHDTTVIL VDEWGNEYKT SYLLERNGLS  180
AGWRGFSMSH RLLKGDLLIF RLIEPCKLQV YIIRVNGRDV VDAALCLMNF DALKKSTNLD  240
LAQKDNRKRK KAKRLEPFYV DFSKPKEYIQ NDSHSAVDLN VSPSVHRSET NSEVLDSEVP  300
EGSDVINRLQ SNEISCSETS FLHDNPQNSI SCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246250RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513015.10.0PREDICTED: B3 domain-containing protein At5g42700-like isoform X3
TrEMBLA0A1S4DHZ80.0A0A1S4DHZ8_TOBAC; B3 domain-containing protein At5g42700-like isoform X3
STRINGXP_009772548.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-35B3 family protein