PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf30065g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 226aa MW: 25419 Da PI: 9.5202

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf30065g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	213.6	6.6e-66	50	205	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 sse+vCy+qCnfCnt+lavsvP + +f +vtvrCGhC++llsv+++ + q l+ + +++++++++ + s+ ++ Niben101Scf30065g00001.1 50 ISSERVCYLQCNFCNTVLAVSVPCSNIFAIVTVRCGHCSNLLSVSMQSSPQPLPLPDP--------QKQQRQQSNVENGSKACES 126 689******************************************99999999985........3333333333444444445 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+s+ ++ + ++ + + pr+ p irPPekrqr PsaynrfikeeiqrikasnPdishr+afs+aaknWahfP+ihfgl Niben101Scf30065g00001.1 127 SSSSKFNRFSAIDYS-PQIEPRITP-IRPPEKRQRLPSAYNRFIKEEIQRIKASNPDISHRQAFSTAAKNWAHFPHIHFGL 205 555555555454444.455688888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.8E-69	51	205	IPR006780	YABBY protein
SuperFamily	SSF47095	7.59E-8	149	198	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.3E-4	154	197	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
SIFSSFTLQF YDFTAYIHSS LCNTLIHPRF SAKNLRNSIT IMSLDMTSLI SSERVCYLQC 60 NFCNTVLAVS VPCSNIFAIV TVRCGHCSNL LSVSMQSSPQ PLPLPDPQKQ QRQQSNVENG 120 SKACESSSSS KFNRFSAIDY SPQIEPRITP IRPPEKRQRL PSAYNRFIKE EIQRIKASNP 180 DISHRQAFST AAKNWAHFPH IHFGLKQAKL DHAVAGESPH KSLGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798278.1	1e-113	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016503299.1	1e-113	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q9XFB0	3e-64	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A076FU30	1e-112	A0A076FU30_TOBAC; FAS protein
TrEMBL	A0A1U7Y567	1e-112	A0A1U7Y567_NICSY; axial regulator YABBY 5-like
STRING	XP_009798278.1	1e-112	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-46	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]