PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf30320g00011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 442aa    MW: 47736.7 Da    PI: 6.1476
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf30320g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.45e-16237293359
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                               + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k+l  +++++ + 
  Niben101Scf30320g00011.1 237 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 293
                               689*****************************************9999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-19235299IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.679237292IPR004827Basic-leucine zipper domain
PfamPF001701.3E-13238291IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11239289No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-12239291No hitNo description
CDDcd147023.23E-6240291No hitNo description
PROSITE patternPS000360242257IPR004827Basic-leucine zipper domain
PfamPF124987.2E-48306431IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDRVFSVDDD IGDHFWSTPP TADLDVDSPN AAASSSYSKM MNRSSSEWAF QRFLQEATAA  60
GSSTSSHPQP PTMTASSSSS SHQNDVVEIK DENLFTPNLN PSTTLNSKPA SSFGLAPPPN  120
IAVDSEEYQA FLKSQLHLAC AAVALTRGKS LNPQDSGSTA HDKGSETASA AQSGSHEVAK  180
IQDKDAGGPV GIPSLPPVQK KPVVQVRSTT SGSSREQSDD DEAEGEAETT QGMDPADAKR  240
VRRMLSNRES ARRSRRRKQA HLTELETQVS QLRVENSSLL KRLTDISQKY NEAAVDNRVL  300
KADVETLRAK VKMAEETVKR VTGLNPLFQA MSEISSMVMP SYSGSPSDTS ADAAVPVQDD  360
PKHHYYQQPP NNHMPTNDPR IQNGMVDVPP IENVQQNPAT AAVGGNKMGR TASMQRVASL  420
EHLQKRIRGE ISSCGTQGRG EQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251258RRSRRRKQ
2253258SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787496.10.0PREDICTED: light-inducible protein CPRF2-like
RefseqXP_016450151.10.0PREDICTED: light-inducible protein CPRF2-like
SwissprotQ990901e-144CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1S3YD350.0A0A1S3YD35_TOBAC; light-inducible protein CPRF2-like
TrEMBLA0A1U7XCW90.0A0A1U7XCW9_NICSY; light-inducible protein CPRF2-like
STRINGXP_009787496.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29342444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.27e-72bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]