PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf31945g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 409aa    MW: 46702.4 Da    PI: 5.2857
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf31945g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.61.4e-091760340
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                              +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  Niben101Scf31945g00009.1 17 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 60
                              578*****************************667888888876 PP
2CCT69.31e-23354397144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea++lRYkeKr+tR+F+KkirYe+RK +Ae RpR+KGrFvk++
  Niben101Scf31945g00009.1 354 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEMRPRMKGRFVKRT 397
                               9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-111562IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0491562IPR000315B-box-type zinc finger
PfamPF006437.0E-81760IPR000315B-box-type zinc finger
CDDcd000211.87E-101862No hitNo description
PROSITE profilePS5101715.854354396IPR010402CCT domain
PfamPF062034.6E-18354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTSSEKKLAN VVGAKTARAC DSCIRKRARW YCAADDAFLC QSCDSSVHSA NPLARRHERV  60
RLKTSSLKSS DEFPYSENSA SVPSWHRGFT RKARTPRNGK NSRNVKNPIQ LIVPEILSDE  120
NLQDENEEQL LYRVPILDPF VADEYSKDQM KNNFNDDHMN KFHGMLNIPS EMELAEFAAD  180
VESLLGKGLD DEESFNYMEL GLGFLEKHDD SMGCSLVDEK IKVENEGEME VLMDNTNYNQ  240
VDYSDTFDLK FDCESLVITL EEDNKGEVGE IIMQDSTNDG LISDSKNNKI LLNLDYGGVL  300
NAWSDQRSPW TTGERPQVDS NDCWPVCMGN CGKIHAYGDM EIMTGHGPVV DEGREARVLR  360
YKEKRRTRLF SKKIRYEVRK LNAEMRPRMK GRFVKRTNFA PTPFPSVNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364380RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765495.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
RefseqXP_016494942.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1S4C1B70.0A0A1S4C1B7_TOBAC; zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1U7VUA80.0A0A1U7VUA8_NICSY; zinc finger protein CONSTANS-LIKE 16-like
STRINGXP_009765495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-94B-box type zinc finger protein with CCT domain