PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf32536g00015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25512.9 Da    PI: 9.436
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf32536g00015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF923e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien++nrqvtf+kRrn +lKKA+ELSvLCdae+a+i+fs++g++yeys+
  Niben101Scf32536g00015.1  9 KRIENNTNRQVTFCKRRNRLLKKAYELSVLCDAEIALIVFSTRGRVYEYSN 59
                              79***********************************************95 PP
2K-box85.31.3e-28731659100
                     K-box   9 leeakaeslqqel.akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                               ++e+ +++ +qel a+  ++i+ +q+++Rhl+Ge+++sL+++eL+qLe++Le++l++iRskK+e++++++e+lqk+e +l++en 
  Niben101Scf32536g00015.1  73 TAETSSAYTTQELnAQFYQQIQLMQNTNRHLVGEGVSSLNVRELKQLENRLERGLTRIRSKKHEMIVAETENLQKREIQLEQENA 157
                               455556666777625789******************************************************************* PP

                     K-box  93 aLrkklee 100
                                Lr+k++e
  Niben101Scf32536g00015.1 158 FLRSKIAE 165
                               *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.506161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.04E-42278No hitNo description
SuperFamilySSF554557.33E-32280IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.49779169IPR002487Transcription factor, K-box
PfamPF014869.1E-2380163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNRLLK KAYELSVLCD AEIALIVFST RGRVYEYSNT  60
NIKTTIERYQ KATAETSSAY TTQELNAQFY QQIQLMQNTN RHLVGEGVSS LNVRELKQLE  120
NRLERGLTRI RSKKHEMIVA ETENLQKREI QLEQENAFLR SKIAENERLQ ELSMMPAGGQ  180
EQDYNAFQQY YARNMLQLNM MEGMQPSNNY DPLLSADK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q6e-20169169Myocyte-specific enhancer factor 2B
1tqe_R6e-20169169Myocyte-specific enhancer factor 2B
1tqe_S6e-20169169Myocyte-specific enhancer factor 2B
6c9l_A6e-20169169Myocyte-specific enhancer factor 2B
6c9l_B6e-20169169Myocyte-specific enhancer factor 2B
6c9l_C6e-20169169Myocyte-specific enhancer factor 2B
6c9l_D6e-20169169Myocyte-specific enhancer factor 2B
6c9l_E6e-20169169Myocyte-specific enhancer factor 2B
6c9l_F6e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774915.11e-152PREDICTED: agamous-like MADS-box protein AGL11 isoform X1
RefseqXP_009774922.11e-152PREDICTED: agamous-like MADS-box protein AGL11 isoform X1
SwissprotF6I4571e-95AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A1U7WKY71e-151A0A1U7WKY7_NICSY; agamous-like MADS-box protein AGL11 isoform X1
STRINGXP_009774915.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.13e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]