PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf34081g00018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 331aa    MW: 37672.6 Da    PI: 7.8861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf34081g00018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09188235455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf34081g00018.1 188 SHSLAERARREKISKKMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 235
                               8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.91E-8182239No hitNo description
SuperFamilySSF474597.85E-17182253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.11184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-18184252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-7188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-9190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLSCGEMSVL ERQRAALERL YSQSKQQLYS LPLQNLAQFN NLITEQMMGS LDIPIERMNE  60
NFTNFNMFGR EHDKGIIGFG FTNNWQETAR PSFSTISNSS VTTVSPPPEK EIDTIVAPRG  120
NVVSTKKRKA EQFSEEEDCK LKRPQSEISE KSQGAASGNN SKENSKTSEV QKPDYIHVRA  180
RRGQATDSHS LAERARREKI SKKMKYLQDL VPGCNKVTGK AGMLDEIINY VQSLQKQVEF  240
LSMKLAALNP RLDLNTDNLF TKAFPSYMSN FPTIDVSTFW EHNLIQHQQM LPQRRENCLM  300
SFPEATSSPI SVVQQQPNFE TDLQSLFQCQ L
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443360.10.0PREDICTED: transcription factor HBI1-like
SwissprotQ9ZPW33e-57HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A1S3XU130.0A0A1S3XU13_TOBAC; transcription factor HBI1-like
STRINGXP_009803168.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.19e-56BR enhanced expression 2