PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf34542g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 129aa MW: 14423.4 Da PI: 4.4887

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf34542g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.00069	22	43	33	54
.TTS-STCHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksL 54 ++s+ ++Ka+i +A +YI +L Niben101Scf34542g00003.1 22 TNSPSVNKASIIVHASKYIEEL 43 45667**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.41E-5	11	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-4	11	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MGSKDQKNAL LNQHLEQLGS ITNSPSVNKA SIIVHASKYI EELKERIDKL NEDVSTSQPS 60 HIDDENSLPL NCPGLLVSIL EAFEELGLEL SDTRVSCSDS FRLEAVSEVR FFSLLVLLFF 120 LSISCLWQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617115.1	3e-65	PREDICTED: transcription factor bHLH61-like isoform X1
Refseq	XP_009617116.1	2e-65	PREDICTED: transcription factor bHLH61-like isoform X2
Refseq	XP_016462125.1	3e-65	PREDICTED: transcription factor bHLH61-like isoform X1
Refseq	XP_016462126.1	2e-65	PREDICTED: transcription factor bHLH61-like isoform X2
TrEMBL	A0A1S3ZCE7	6e-64	A0A1S3ZCE7_TOBAC; transcription factor bHLH61-like isoform X1
TrEMBL	A0A1S3ZCI7	5e-64	A0A1S3ZCI7_TOBAC; transcription factor bHLH61-like isoform X2
STRING	XP_009617115.1	1e-64	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2945	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10570.1	1e-05	bHLH family protein