PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf34895g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 205aa    MW: 23586.4 Da    PI: 6.2658
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf34895g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g WT+eEd +l+ +v+++G  +W+  +++ g+ R++k+c++rw +yl
  Niben101Scf34895g00004.1 14 KGTWTPEEDRKLAAYVTKYGCWNWRQLPKYAGLARCGKSCRLRWMNYL 61
                              799*****************99************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-22764IPR009057Homeodomain-like
PROSITE profilePS5129422.38965IPR017930Myb domain
SMARTSM007172.8E-101363IPR001005SANT/Myb domain
PfamPF002498.3E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-221587IPR009057Homeodomain-like
CDDcd001671.05E-91661No hitNo description
PROSITE profilePS500905.47162125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-96587IPR009057Homeodomain-like
SMARTSM007174.466127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVRTPSYDQN GKKKGTWTPE EDRKLAAYVT KYGCWNWRQL PKYAGLARCG KSCRLRWMNY  60
LRPNIKRGNY TKEEDDIILK LHAQLGNSDC ESKSINQASG TSRKIVENQN AVSRNNCMRS  120
YEIVLESSQW STKQSSSEEH QAFQEEAILM DNSGSFCTEP FLVDTSFSSK TDYTFPSIDW  180
ELICPPSPLI GHEFLSSFDL EDYNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-151491783B-MYB
1h8a_C2e-15149127103MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238731.11e-136PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1J6KFD91e-134A0A1J6KFD9_NICAT; Myb-related protein myb4
STRINGXP_009624516.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.12e-36myb domain protein 34