PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf35149g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 359aa    MW: 40411.7 Da    PI: 8.4089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf35149g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015676323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ C+k Fs+   L  H+r H
  Niben101Scf35149g00005.1 56 CHVCDKGFSSGKALGGHMRIH 76
                              *******************99 PP
2zf-C2H214.50.0001119138221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C++Cgk F++  +L  H+r
  Niben101Scf35149g00005.1 119 TCSICGKNFPSMKSLFGHMR 138
                               6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-85476IPR007087Zinc finger, C2H2
SMARTSM003550.125476IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4945481IPR007087Zinc finger, C2H2
SuperFamilySSF576675.45E-95576No hitNo description
Gene3DG3DSA:3.30.160.604.9E-45676IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SuperFamilySSF576675.45E-9113140No hitNo description
PROSITE profilePS501579.598118140IPR007087Zinc finger, C2H2
SMARTSM003550.018118140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-4119140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
PfamPF139124.6E-8120142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVDYQDHRFG NETQLWIKLK ISEKDILKDQ KQVPVEEHEY DEEEVQIPKN NFRRICHVCD  60
KGFSSGKALG GHMRIHVQAS KKLLSAKKGK RLFHKKRILD LHGQLVEFDN FNNQLPPPTC  120
SICGKNFPSM KSLFGHMRCH PERAWRGIQP PINKNTTCIS LSDEKTASAS ASGEDISKSV  180
LGWSVTAKRG RKPIADDKEQ LNDAVHHLML LANGNSFESG LTGDRCYHNK HGIPEELEIT  240
NSINSITSKT EAPEELACHV NKKRRKKVKL RFLGDAVTPV RVVDDQNRGT MASSMIDPVN  300
EPAASSSKNG NKNFTPIGPS SSQLTSPGEV SGRRILDFDL NELPPHEDDV EYFQFFQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265KKRRK
2261266KKRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264895.10.0PREDICTED: ras-responsive element-binding protein 1
TrEMBLA0A314L4K40.0A0A314L4K4_NICAT; Zinc finger protein zat3
STRINGXP_009797499.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-16C2H2 family protein