PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf36316g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 219aa MW: 25290.5 Da PI: 10.1827

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf36316g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.8	1.1e-28	73	129	4	59
SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++WrKYGqK++kgs fpr+YYrC+++ +C +kk++e+s +dp+++++ Y+geHnh+ Niben101Scf36316g00001.1 73 TWAWRKYGQKPIKGSLFPRNYYRCSTSkDCDAKKHIEKSPRDPNLFIVAYSGEHNHP 129 599*******************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-4	37	67	IPR003657	WRKY domain
PROSITE profile	PS50811	28.759	65	131	IPR003657	WRKY domain
SMART	SM00774	5.2E-30	70	130	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-23	73	131	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.3E-26	73	131	IPR003657	WRKY domain
Pfam	PF03106	4.1E-23	74	129	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
IPQQLNPRPV LKRAKVRPTI TVPVRNPIIQ IRRRKNQPEK TVHEVSQEEL IEFTWAWRKY 60 GQKPXQEELI EFTWAWRKYG QKPIKGSLFP RNYYRCSTSK DCDAKKHIEK SPRDPNLFIV 120 AYSGEHNHPP PANRCTLSDS TNSKPKSKKL PKGINIVPTR SLRFNSSSSN DFGSSPISPD 180 TPPVFEIESV NPNKNDMVVE EKKADIEEEE KVILTPNNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-16	62	132	9	78	Probable WRKY transcription factor 4
2lex_A	1e-16	62	132	9	78	Probable WRKY transcription factor 4

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778379.1	1e-107	PREDICTED: probable WRKY transcription factor 27
Refseq	XP_016506104.1	1e-107	PREDICTED: probable WRKY transcription factor 27
TrEMBL	A0A1S4CYM6	1e-106	A0A1S4CYM6_TOBAC; probable WRKY transcription factor 27
TrEMBL	A0A1U7WUK4	1e-106	A0A1U7WUK4_NICSY; probable WRKY transcription factor 27
STRING	XP_009778379.1	1e-107	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3668	13	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	1e-31	WRKY DNA-binding protein 27