PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf36703g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 180aa    MW: 19679.3 Da    PI: 4.6367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf36703g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.8e-11135179351
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                               y+GVr+++  g+W AeIr p   + r +r++ g+f+   +Aa a++ a+ 
  Niben101Scf36703g00001.1 135 YRGVRQHP-FGKWTAEIRGP---N-RaARIWHGTFDNSHDAAVAYDDAAY 179
                               9*******.9*******998...3.47********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.59E-13134168No hitNo description
PfamPF008473.3E-7134179IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-13134179IPR016177DNA-binding domain
PROSITE profilePS5103217.846134180IPR001471AP2/ERF domain
SMARTSM003801.4E-9134180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-19134179IPR001471AP2/ERF domain
PRINTSPR003676.9E-7135146IPR001471AP2/ERF domain
PRINTSPR003676.9E-7157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MLTKDKQSEE VGRGGEISES DIAEMVSTPN NSFNNSSTGV VFSSNSNSNS LFNITNSDFI  60
STPTSSPHPD WNFLSFDDST RLTALLNDGP ENVSCTYKGV DFISTPTSDS NLSLDVTTSL  120
TTLSNSAPEN ARRIYRGVRQ HPFGKWTAEI RGPNRAARIW HGTFDNSHDA AVAYDDAAYR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261384.17e-96PREDICTED: probable WRKY transcription factor 41 isoform X1
RefseqXP_019261385.17e-96PREDICTED: probable WRKY transcription factor 41 isoform X1
RefseqXP_019261387.13e-96PREDICTED: probable WRKY transcription factor 41 isoform X3
TrEMBLA0A314LAA12e-94A0A314LAA1_NICAT; Putative wrky transcription factor 41
STRINGXP_009793242.11e-94(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-13ethylene response factor 110