PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf36703g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 114aa    MW: 12885.6 Da    PI: 10.0599
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf36703g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.39.8e-1194114222
                               --SS-EEEEEEE--TT-SS-E CS
                      WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                               +Dgy+WrKYGqK++ gs++pr
  Niben101Scf36703g00005.1  94 EDGYSWRKYGQKPILGSKYPR 114
                               7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-980114IPR003657WRKY domain
PROSITE profilePS5081111.07288114IPR003657WRKY domain
SuperFamilySSF1182902.62E-889114IPR003657WRKY domain
PfamPF031064.1E-794114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MKQDVCQYLF VEILSSYDKA LSLLNGTALS VMSKGKQIIN SAPSSSTDKL ESPHLPVDSS  60
TKSSDRPSNS RKRKMISRRT EYVHARYGEE VPPEDGYSWR KYGQKPILGS KYPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974SRKRKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793244.12e-71PREDICTED: probable WRKY transcription factor 41 isoform X3
TrEMBLA0A1U7Y1Y34e-70A0A1U7Y1Y3_NICSY; probable WRKY transcription factor 41 isoform X3
STRINGXP_009793242.12e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-12WRKY family protein