PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf37335g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 241aa MW: 27041.4 Da PI: 6.9044

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf37335g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00031	36	85	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L l + + + Ka+iL +A +++k++ Niben101Scf37335g00005.1 36 KRIHKAEREKLKREHLNELFLGLSNALELS----EQMNGKASILNEAARFVKDM 85 688899*******************998....68899*******999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-10	32	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-6	32	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.36E-4	33	90	No hit	No description
PROSITE profile	PS50888	10.531	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MDTESPAPVL EKDTTAVETS LDSSHLGKKN QKKAPKRIHK AEREKLKREH LNELFLGLSN 60 ALELSEQMNG KASILNEAAR FVKDMLSQIK HLRTENTTLL SESQNLSVEK KELQDETSAL 120 EAEIGRLQNE VKAREAKTNL DLNLAPPEIQ HPEFALQNNY TSLPASEHAF QDSQIMNPAY 180 VFPFRSNSHV YPAPYATKST ATPTSSVKKP QARYPTPADV WPSQIFEKRP RLLGQEVQDG 240 A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019232396.1	1e-169	PREDICTED: transcription factor bHLH47-like
TrEMBL	A0A1J6KDC6	1e-167	A0A1J6KDC6_NICAT; Transcription factor bhlh47
STRING	XP_009612854.1	1e-162	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	6e-43	bHLH family protein