PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf37475g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20291.7 Da    PI: 10.6482
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf37475g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.3e-131040232
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCd 32
                              +i n+s r+ tf kR++g++KK +ELS+LC+
  Niben101Scf37475g00001.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCA 40
                              89****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-13158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.264139IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-17293IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-131039IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCA LMKTNLSPYE NQPEVWPNTM  60
GAQRVLAEFK RMPEIEQSKK MVNQESFIRQ RIAKASEQLK KQSKENREKE MTEVMYQCLA  120
GKGMQNLNLG DLNDLGWVID QNLKEINKRI EAFKKGASSS SAAVVSQAVA PTPVEQKPV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618268.11e-105PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_016489113.11e-105PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-61AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1S4BJL11e-104A0A1S4BJL1_TOBAC; agamous-like MADS-box protein AGL80
STRINGXP_009618268.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-52AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]