PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf38644g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 206aa MW: 23175.6 Da PI: 6.9338

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf38644g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	236.7	1e-72	3	205	165	374
GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 L+++A++l+vpfef++ v ++ledl++++++ + gEalaVn+v +lhr++ +++ ++L ++++ P++v++veqea+hn Niben101Scf38644g00002.1 3 LTELAHSLHVPFEFHP-VGEQLEDLKPHMFNRRIGEALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHN 80 89************.7***************************9......444557******************* PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 ++ Fl rfleal+yysa+fdsl+a++p++s++r+k+E+ ++++ei+n+v+cegaer+ rhe+lekWr+ +e GFk v+ls +a+ Niben101Scf38644g00002.1 81 GPYFLGRFLEALHYYSAIFDSLDATFPADSSQRAKLEQNIFAPEIMNIVSCEGAERVVRHERLEKWRRLMEGKGFKGVALSANAV 165 ********************************************************************************* PP GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +q klll ++ dgy++ +++g+l+lgW+dr+++++SaWr Niben101Scf38644g00002.1 166 TQSKLLLGLYSCDGYKLTDDNGCLLLGWQDRAILAASAWR 205 *************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.225	1	185	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-70	3	205	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
RCLTELAHSL HVPFEFHPVG EQLEDLKPHM FNRRIGEALA VNSVNRLHRV PVNCIGNLLA 60 MIRDQAPNIV TIVEQEASHN GPYFLGRFLE ALHYYSAIFD SLDATFPADS SQRAKLEQNI 120 FAPEIMNIVS CEGAERVVRH ERLEKWRRLM EGKGFKGVAL SANAVTQSKL LLGLYSCDGY 180 KLTDDNGCLL LGWQDRAILA ASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-51	3	204	179	378	Protein SCARECROW
5b3h_A	2e-51	3	204	178	377	Protein SCARECROW
5b3h_D	2e-51	3	204	178	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613034.1	1e-147	PREDICTED: DELLA protein RGL1-like
Swissprot	G7L166	1e-131	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A1S4C8Z1	1e-145	A0A1S4C8Z1_TOBAC; DELLA protein RGL2-like
TrEMBL	A0A1U7YX55	1e-145	A0A1U7YX55_NICSY; DELLA protein RGL2-like
STRING	XP_009613034.1	1e-147	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12566	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-55	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]