PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf39169g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 251aa MW: 28536.2 Da PI: 8.072

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf39169g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.3	7.5e-33	50	105	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k +YkeClkNhA+ +GghavDGCgEfmp+ geegt +alkCaAC+CHRnFHR+e++ Niben101Scf39169g00001.1 50 KPKYKECLKNHAVGIGGHAVDGCGEFMPA-GEEGTLDALKCAACNCHRNFHRKETQI 105 679***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01566	7.6E-31	52	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-23	52	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.3E-30	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.84	53	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	7.3E-28	147	221	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-17	153	220	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.1E-24	159	215	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEFETQEDQK EIRASPNYNS VLEISNSTDD PKMPSNSDEL ILDAPLQMRK PKYKECLKNH 60 AVGIGGHAVD GCGEFMPAGE EGTLDALKCA ACNCHRNFHR KETQIHHPPY YRTLPSGYFQ 120 HAMPPQRPLA LPSTSGGGGG GGYREDQEEM CNPNNSGTKK RFRTRFNQEQ KDKMLELAEK 180 LGWRIQRQDE GVVQQLCNEI GIKRHVFKVW MHNNKLTLGK KTLIQSTNPY LFAARKEAEK 240 EEDNTPKKNS F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-21	158	215	16	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802158.1	1e-164	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Refseq	XP_016462880.1	1e-164	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Swissprot	A2Z259	3e-70	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	2e-70	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1S3ZEH4	1e-163	A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2
TrEMBL	A0A1U7YG84	1e-163	A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2
STRING	XP_009802157.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-66	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]