PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf39284g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 152aa MW: 16949.6 Da PI: 9.5148

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf39284g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Niben101Scf39284g00001.1 45 FSCNYCRRKFYSSQALGGHQNAH 67 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-6	43	72	No hit	No description
PROSITE profile	PS50157	11.053	45	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MSYEPNTALN LSLSRNELSF DLLFDQSSSS SSSSPLSPAD QPRVFSCNYC RRKFYSSQAL 60 GGHQNAHKLE RTLAKKSREL SSSLRPHSGW STNRNSGSDP TSPSHGHHGH AARFVTTELN 120 YGRREIMSYG SRKNGENVVQ EDFGQLDLSL RL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019236390.1	1e-106	PREDICTED: zinc finger protein 2
TrEMBL	A0A1J6K1X0	1e-105	A0A1J6K1X0_NICAT; Zinc finger protein 2
STRING	XP_009614282.1	7e-99	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8876	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	5e-25	zinc finger protein 2