PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf39409g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 249aa    MW: 28551.4 Da    PI: 10.1791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf39409g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-16138232194
                               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                               f+k+lt +dv  +  l +p kfa+ +     +g ++++++l++ d+ gr W +k    k +++y++++ Wk+ v +++Lk+gD++
  Niben101Scf39409g00004.1 138 FEKTLTEKDVEGK--LLIPAKFARYFpkttsNGHTRRDVKLQFVDPGGRFWAIKW--VKDGSQYFFRGKWKDIVAEHELKSGDII 218
                               8999999999866..9*******666****988889*******************..999999********************** PP

                               EEEE-SSSEE..EE CS
                        B3  81 vFkldgrsefelvv 94 
                               v++l++++ f  ++
  Niben101Scf39409g00004.1 219 VIELSHDKHFPIRF 232
                               ****9999986554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-18135230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19136230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124136236IPR003340B3 DNA binding domain
PfamPF023624.3E-14138232IPR003340B3 DNA binding domain
SMARTSM010194.6E-12138236IPR003340B3 DNA binding domain
CDDcd100172.23E-15138234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTNKSNVDVQ EKAEAKPTSY TGSRMQNLMT PTEEADSFVS ILGHKDVKSR KNINPYYNGD  60
KNMLMYRNSF NVQGREKGEQ VMIGDNLMIE NKESVTDAAN YSKSSKGSGI KNSFKQMMMR  120
IFNRGKPDKE EGQVYSVFEK TLTEKDVEGK LLIPAKFARY FPKTTSNGHT RRDVKLQFVD  180
PGGRFWAIKW VKDGSQYFFR GKWKDIVAEH ELKSGDIIVI ELSHDKHFPI RFKKQTNILS  240
SSVTTGDHR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235627.11e-161PREDICTED: uncharacterized protein LOC109215958
TrEMBLA0A1J6KUP61e-160A0A1J6KUP6_NICAT; Uncharacterized protein
STRINGXP_009792994.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1700945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-06related to ABI3/VP1 2