PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf39490g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 179aa    MW: 20481.2 Da    PI: 7.6582
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf39490g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.8e-114368126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                              y   +C+++ +tG C yG+ CkF H+
  Niben101Scf39490g00006.1 43 YQPDICKDYKETGNCGYGNACKFLHD 68
                              67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.15E-94073IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2024270IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-74269IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-94368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-124373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.7E-13103165IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.45E-13119162No hitNo description
PfamPF139201.8E-8119161No hitNo description
SMARTSM001840.0016120157IPR001841Zinc finger, RING-type
CDDcd001622.52E-5120161No hitNo description
PROSITE profilePS5008910.217120158IPR001841Zinc finger, RING-type
PROSITE patternPS005180135144IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MNQYTDYKAG LRREHTISSE KACGAHGPLR ASAHIRVSTR FDYQPDICKD YKETGNCGYG  60
NACKFLHDRG DYKAGRQLEK EWEEAAKERK RKLAMGMLDE DDDDAEKSDE DDDDSLPFAC  120
FICRQPFVDP IMTKCKHYFC AHCALKHHAK NKKCFVCNQP TIGIFNTALE ISKRMAQGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-4927175181317RING finger protein 113A
5z58_M4e-4927175181317RING finger protein 113A
6ff4_t4e-4927175181317RING finger protein 113A
6ff7_t4e-4927175181317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794839.11e-119PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_016511945.11e-119PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-93C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S4DEQ91e-118A0A1S4DEQ9_TOBAC; zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A1U7Y6H21e-118A0A1U7Y6H2_NICSY; zinc finger CCCH domain-containing protein 1
STRINGXP_009794839.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-85C3H family protein